Bioinformatics homer
WebAug 30, 2024 · Section 13 is about homerResults, which is the de novo results folder. This seems fine, they contain .motif files. However, my question is about the knownResults … Webhomer motif result interpretation. Note that motif length will affect all three metrics. Longer motif tends to be harder to find (so smaller %background), so their p-value can be very significant even with smaller %target. Shorter motifs tend to be eaiser o find, but not necessarily less significant p-value than longer one, because %target have ...
Bioinformatics homer
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WebApr 14, 2024 · Recently Concluded Data & Programmatic Insider Summit March 22 - 25, 2024, Scottsdale Digital OOH Insider Summit February 19 - 22, 2024, La Jolla WebPeak-calling using homer. Ask Question Asked 3 years, 4 months ago. Modified 3 years, 4 months ago. Viewed 271 times 0 $\begingroup$ I have a total of 78 ATAC ... Thanks for contributing an answer to Bioinformatics Stack Exchange! Please be sure to answer the question. Provide details and share your research!
WebApr 10, 2024 · Definition. …. Bioinformatics, as related to genetics and genomics, is a scientific subdiscipline that involves using computer technology to collect, store, analyze … WebThe problem is I get unusable p-values and q-values (around 1e-3 and 0.5 respectively). I tried to run the analysis on a published data set as a sanity check (used this paper ), and although I get the right motifs in my results, …
WebRapidly evolving sequencing technologies produce data on an unparalleled scale. A central challenge to the analysis of this data is sequence alignment, whereby sequence reads must be compared to a reference. A wide variety of alignment algorithms and software have been subsequently developed over th … WebOct 27, 2015 · Abstract. Summary: Genomic datasets are often interpreted in the context of large-scale reference databases. One approach is to identify significantly overlapping gene sets, which works well for gene-centric data. However, many types of high-throughput data are based on genomic regions.
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